Data
- Data Inra Dataverse
- Raw data Paired end sequencing of a library of E. alphitoides
- Assembled Data
- Contigs / genes
List of the 951 contigs longer than 10kb and the 3045 annotated genes- Files
- 951 contigs E. alphitoides (>= 10Kb, aligned on Blumeria genome)
- CDS of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
- Coordinates of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
- Sequences of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
- Structure of the 3,045 genes contained in the 951 E. alphitoides contigs (>= 10Kb, aligned on Blumeria genome)
- 49.294 genes predicted on the E. alphitoides assembly.
De novo detection with Augustus software (Botrytis cinerea model) - Correspondence between the 3,045 E. alphitoides genes and their orthologs in Blumeria.
Only 3.039 E. alphitoides genes have an ortholog.
Col1: E. alphytoides geneID (g1 to g3045)
Col2: E. alphytoides geneID (contigID:start-end)
Col3: Blumeria geneID and function (geneID_function) - de novo assembly of E. alphitoides.
103.796 contigs obtained by CLC BIO 7.0.3, Cdhit EAST 95% and elimination of contigs <500bp.
Data resulting from this work has been deposited in Data INRA portal, DOI : 10.15454/UGMTBK
184,631,409 sequences x 2
SRA Bioproject : PRJNA593204
SRA Accession : SRR10956459
| Assembly | Library | Assembler | Assembled by |
|---|---|---|---|
| Assembly 1 | 1 | CLCBio 7.0.3 |
| Contigs >= 100bp | Contigs >= 500bp | |
|---|---|---|
| Number of contigs | 555,289 | 103,796 |
| Total length (bp) | 308,366,353 | 220,475,546 |
| Average length (bp) | 532 | 2,124 |
| N50 (bp) | 1,735 | 3,449 |
© INRAE 2020 Erysiphe alphitoides sequencing project |